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Thinking like an image analyst, Part I: Project overview and data import
Pearl V. Ryder One thing I’ve found very helpful in my journey as an image analyst is learning from others by observing their thought process when they tackle a new problem. In this series of five blog posts, my goal is to share how I approached an image analysis project that I recently undertook as...
Daya Mena, B.A.
Daya Mena completed her BA in Biomedical Sciences at Hampshire College in 2019, while concentrating on Biomedical and Biomathematical Sciences. Her undergraduate thesis was on using mathematical modeling to predict the impact of gene editing on HIV therapy. Alongside her studies, Daya served on the...
Creating a Cloudwatch Dashboard to Monitor Distributed CellProfiler Runs
by Erin Weisbart This explains how to set up a Dashboard in Amazon Web Services (AWS) Cloudwatch, which widgets we find most helpful for monitoring Distributed CellProfiler (DCP) runs in our Cloudwatch Dashboard, and what you might learn from each widget. AWS Cloudwatch Dashboards are “customizable...
Inaugural Collaborative Research Catalyst Award
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Fostering a kinder workplace culture
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Shayna Mallat
Shayna Mallat, MSResearch Associate
Adam Granger
Adam Granger, PhDGroup Leader
Published: "CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis"
We have now released CellProfiler Analyst 3.0. Bioinformatics published a paper by members of the COBA team outlining the update. In addition to enhanced performance, this CellProfiler Analyst release adds support for neural network classifiers, identifying rare object subsets, and direct transfer...