CellProfiler Analyst
Official website for open source software CellProfiler Analyst
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Pan Group
The Pan Group in the Stanley Center for Psychiatric Research focuses on translating emerging human genetics into biological insights that can be turned into potential novel therapeutics for major psychiatric illnesses including schizophrenia and bipolar disorders.
Publications
Selected publications and preprints Nadig, A., Replogle, J. M., Pogson, A. N., McCarroll, S. A., Weissman, J. S., Robinson, E. B., & O'Connor, L. J. (2024). Transcriptome-wide characterization of genetic perturbations. bioRxiv, 2024-07. Salehi Nowbandegai, P.*, Wohns, A. W.*, …, Neale, B. M. & O...
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Neurogranin, Encoded by the Schizophrenia Risk Gene NRGN, Bidirectionally Modulates Synaptic Plasticity via Calmodulin-Dependent Regulation of the Neuronal Phosphoproteome
Hwang, Hongik, Matthew J. Szucs, Lei J. Ding, Andrew Allen, Xiaobai Ren, Henny Haensgen, Fan Gao, et al. 2021. “Neurogranin, Encoded by the Schizophrenia Risk Gene NRGN, Bidirectionally Modulates Synaptic Plasticity via Calmodulin-Dependent Regulation of the Neuronal Phosphoproteome”. Biological Psychiatry 89 (3): 256-69.
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Thinking like an image analyst, Part V: Making measurements and exporting the data for analysis
Pearl V. Ryder In the previous posts in this series, I explained how I approached an image analysis project to segment extracellular fibrils, giving an overview of the project (Part I), showing how I removed bright debris from the images (Part II), enhanced the fiber brightness and reduced...
Published: "2020 BioImage Analysis Survey: Community experiences and needs for the future"
The results of the 2020 BioImage Analysis Survey have been published online by Cambridge University Press. In this paper, we summarize a global survey of 484 participants of the imaging community, conducted in 2020 through the NIH Center for Open BioImage Analysis (COBA). Read the paper here.
EMBL Course: Deep learning for image analysis [Virtual]
The EMBL Course "Deep learning for image analysis" is being held virtually from January 17-21, 2022. Additional pre-course sessions will be held on Friday, December 3, 2021, Friday, December 17, 2021 and on Monday, January 10, 2022, which will bring everyone to a good starting position for a week...
Nomic to Provide nELISA to JUMP Cell Painting Consortium
Protein profiling company Nomic announced in a press release today that it is providing access to the company’s nELISA TM platform to the Joint Undertaking in Morphological Profiling-Cell Painting (JUMP-CP) consortium. With this access, Nomic joins the JUMP-CP consortium as a Supporting Partner...