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Technical descriptions of CellProfiler and CellProfiler Analyst software can be found in our papers. For all CellProfiler tutorials, visit our YouTube playlist.

The properties file is a plain text file that contains the configuration information necessary for CPA to access your data and images. This file can be stored anywhere on your computer. It is selected and loaded upon startup of CPA. If you use CellProfiler to produce the data to be analyzed in CPA...

Version Manual 3.0 [ HTML] 2.2.1 [ HTML] 2.0 [ PDF] 1.0 [ PDF]

CellProfiler Analyst Example Data and Properties File Example database, configuration file, and images: Single 96-well plate of human cellular images, for use with CellProfiler Analyst 2.0. More sample images and information on the image data can be found on the Broad Bioimage Benchmark Collection...

CellProfiler Analyst (CPA) provides tools for classifying biological images and exploring and visualizing multidimensional data (particularly from high-throughput experiments) that has been extracted from companion image analysis software CellProfiler. CellProfiler Analyst’s primary tools: Image...

CPA requires access to the following data sources: An image table and an object table containing measurements and metadata These may reside in a MySQL or SQLite database or in a set of comma-separated value (CSV) files. A MySQL database is recommended, though you may need to consult with your local...