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Help! I want to use CellProfiler Analyst but I ran my pipeline with ExportToSpreadsheet!
David R. Stirling We’ve all done this before – CellProfiler Analyst needs a database file, but your CellProfiler pipeline that took days to run was set up to export spreadsheets. To make matters worse, you also need a .properties file explaining what to do with that database. Fortunately, you don’t...
II. Installation and getting started
CPA releases All CellProfiler-Analyst releases can be found here Prerequisites Install JDK 1.8 and Java II.A Mac OS X Open dmg file and copy CellProfiler-Analyst.app to /Applications. II.B Windows 7 Run the setup.exe to create the executable and shortcuts. II.C Using the example dataset Download the...
Research
Cell Cycle Jurkat Cells
Accession number BBBC048 · Version 1 Example images Biological application Abstract: We show that deep convolutional neural networks combined with nonlinear dimension reduction enable reconstructing biological processes based on raw image data. We demonstrate this by reconstructing the cell cycle of...
Image Sets
Identification and segmentation Accession Description Mode Fields per Sample Total Fields Total Images Ground Truth BBBC001 Human HT29 colon-cancer cells Fluorescent 6 6 6 BBBC002 Drosophila Kc167 cells Fluorescent 5 50 50 BBBC003 Mouse embryos DIC 15 15 15 BBBC004 Synthetic cells Fluorescent 20 100...