Shantanu Singh
I lead the image-based profiling team. We develop machine learning and statistical methods to create fingerprints of genes, chemicals, and diseases from microscopy images of cells.
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Tutorials
Technical descriptions of CellProfiler and CellProfiler Analyst software can be found in our papers. For all CellProfiler tutorials, visit our YouTube playlist.
III. Setting up the properties file
The properties file is a plain text file that contains the configuration information necessary for CPA to access your data and images. This file can be stored anywhere on your computer. It is selected and loaded upon startup of CPA. If you use CellProfiler to produce the data to be analyzed in CPA...
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Human kidney cortex cells
Accession number BBBC051 · Version 1 Example images Biological application The dataset was designed to train a classification algorithm to correctly identify cell types in the human kidney cortex. Images Confocal single channel images of DAPI fluorescence cropped from tissue sections. Images...