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Manuals

Version Manual 3.0 [ HTML] 2.2.1 [ HTML] 2.0 [ PDF] 1.0 [ PDF]

Examples

CellProfiler Analyst Example Data and Properties File Example database, configuration file, and images: Single 96-well plate of human cellular images, for use with CellProfiler Analyst 2.0. More sample images and information on the image data can be found on the Broad Bioimage Benchmark Collection...

Introduction

CellProfiler Analyst (CPA) provides tools for classifying biological images and exploring and visualizing multidimensional data (particularly from high-throughput experiments) that has been extracted from companion image analysis software CellProfiler. CellProfiler Analyst’s primary tools: Image...

I. Preliminary data requirements

CPA requires access to the following data sources: An image table and an object table containing measurements and metadata These may reside in a MySQL or SQLite database or in a set of comma-separated value (CSV) files. A MySQL database is recommended, though you may need to consult with your local...