A multimodal cell census and atlas of the mammalian primary motor cortex.
Network, BRAIN Initiative Cell Census. 2021. “A Multimodal Cell Census and Atlas of the Mammalian Primary Motor Cortex.”. Nature 598 (7879): 86-102.
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Venous cerebral blood volume increase during voluntary locomotion reflects cardiovascular changes.
Huo, Bing-Xing, Stephanie E Greene, and Patrick J Drew. 2015. “Venous Cerebral Blood Volume Increase During Voluntary Locomotion Reflects Cardiovascular Changes.”. NeuroImage 118: 301-12.
FDX1 regulates cellular protein lipoylation through direct binding to LIAS
Dreishpoon, Margaret B., Nolan R. Bick, Boryana Petrova, Douglas M. Warui, Alison Cameron, Squire J. Booker, Naama Kanarek, Todd R. Golub, and Peter Tsvetkov. 2023. “FDX1 Regulates Cellular Protein Lipoylation through Direct Binding to LIAS”. BioRxiv.
Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma
Hofman, Damon A., Jorge Ruiz-Orera, Ian Yannuzzi, Rakesh Murugesan, Adam Brown, Karl R. Clauser, Alexandra L. Condurat, et al. 2023. “Translation of Non-Canonical Open Reading Frames As a Cancer Cell Survival Mechanism in Childhood Medulloblastoma”. BioRxiv.
Base editor scanning charts the DNMT3A activity landscape.
Lue, Nicholas Z, Emma M Garcia, Kevin C Ngan, Ceejay Lee, John G Doench, and Brian B Liau. 2023. “Base Editor Scanning Charts the DNMT3A Activity Landscape.”. Nature Chemical Biology 19 (2): 176-86.
CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML.
Vinyard, Michael E, Cindy Su, Allison P Siegenfeld, Amanda L Waterbury, Allyson M Freedy, Pallavi M Gosavi, Yongho Park, et al. 2019. “CRISPR-Suppressor Scanning Reveals a Nonenzymatic Role of LSD1 in AML.”. Nature Chemical Biology 15 (5): 529-39.
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
Tognon, Manuel, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, and Luca Pinello. 2021. “GRAFIMO: Variant and Haplotype Aware Motif Scanning on Pangenome Graphs.”. PLoS Computational Biology 17 (9): e1009444.
Screening thousands of transcribed coding and non-coding regions reveals sequence determinants of RNA polymerase II elongation potential.
Vlaming, Hanneke, Claudia A Mimoso, Andrew R Field, Benjamin J E Martin, and Karen Adelman. 2022. “Screening Thousands of Transcribed Coding and Non-Coding Regions Reveals Sequence Determinants of RNA Polymerase II Elongation Potential.”. Nature Structural & Molecular Biology 29 (6): 613-20.
Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments.
Goel, Viraat Y, Miles K Huseyin, and Anders S Hansen. 2023. “Region Capture Micro-C Reveals Coalescence of Enhancers and Promoters into Nested Microcompartments.”. Nature Genetics 55 (6): 1048-56.
Transcriptome variation in human tissues revealed by long-read sequencing.
Glinos, Dafni A, Garrett Garborcauskas, Paul Hoffman, Nava Ehsan, Lihua Jiang, Alper Gokden, Xiaoguang Dai, et al. 2022. “Transcriptome Variation in Human Tissues Revealed by Long-Read Sequencing.”. Nature 608 (7922): 353-59.