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Making it easy to share the CRediT on your collaborative research projects

Blog: May 04, 2023
Beth Cimini In the Imaging Platform, we tend to work on a lot of big, complicated projects , with a lot of moving pieces and sometimes collaborators in many countries! This is fantastic for science, but when it comes to writing a paper, it can make just gathering all the information about "who did...

Ksenija Krasina

Person: Imaging Platform Administrative Assistant
I am the Administrative Assistant for the Imaging platform, holding dual master’s degrees in Digital Economy and Business from Zagreb University of Applied Sciences, as well as Cultural and Fashion studies from the University of Zagreb. My interests lie in the financial aspect of nonprofit...

Ankur Kumar

Person: Computational Associate II
I am interested in hacking biological systems for fun and profit. This includes (non-exhaustively) using tools from mathematics, computer science, and engineering disciplines to probe, understand, and program biological systems.

Announcing CellProfiler 4.2.6 and RunCellpose updates

Blog: August 16, 2023
Hi all, Due to issues with pip installation with CellProfiler on some platforms, we have released a version 4.2.6 with slightly updated dependency pins. If you are using the CellProfiler 4.2.5 application downloaded from our website, there is no need for you to update - 4.2.6 contains no changes to...

Best Practices for Jupyter Notebook

Blog: July 26, 2023
When you are new to the coding world, a lot of new information can be overwhelming. Staying organized might help ease the learning process. This blog post is about simple ways to organize your Jupyter notebooks to make them more reproducible and user-friendly. First, let me begin by introducing the...

Microscopy in the cloud: CellProfiler and Cell Painting on Terra

Blog: July 26, 2023
Microscopy in the cloud: CellProfiler and Cell Painting on Terra Authors: Carmen Diaz Verdugo, Stephen Fleming, Nicole Deflaux and Amy Unruh Carmen Diaz Verdugo is a Computational Scientist in the Precision Cardiology Lab, and a member of Patrick Ellinor’s group. Stephen Fleming is a Senior Machine...

Srijit Seal

Person: Visiting Student
My interest lies in applying machine learning methods to analyze and interpret the Cell Painting assay for predicting drug efficacy, safety, and toxicity. I am passionate about education outreach, advocating for a better understanding of Artificial Intelligence and delivering seminars about its role...

Alán Fernando Muñoz González

Person: Postdoctoral Associate
My interests lie in the interface of computer science, math, image analysis, and biology. I aim to develop tools and workflows to process high throughput imaging datasets, with special interest on applying computational methods on live microscopy data. I am also keen on extracting biological...