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Be a Histology Hero with CellProfiler

Minh Doan Thanks to the rapid advancement in image processing, we now have so many techniques to characterize cellular and subcellular objects (hooray CellProfiler!) Measuring cultured cells in monolayers is (usually) easy…but what about examining how cells interact with each other and their...

Jonne Rietdijk

My interests span computational biology, toxicology, and pharmacology. I focus on using Cell Painting and multi-omics integration to predict toxicity endpoints and elucidate the molecular mechanisms underlying diverse toxic responses.

Thinking like an image analyst, Part I: Project overview and data import

Pearl V. Ryder One thing I’ve found very helpful in my journey as an image analyst is learning from others by observing their thought process when they tackle a new problem. In this series of five blog posts, my goal is to share how I approached an image analysis project that I recently undertook as...

Creating a Cloudwatch Dashboard to Monitor Distributed CellProfiler Runs

by Erin Weisbart This explains how to set up a Dashboard in Amazon Web Services (AWS) Cloudwatch, which widgets we find most helpful for monitoring Distributed CellProfiler (DCP) runs in our Cloudwatch Dashboard, and what you might learn from each widget. AWS Cloudwatch Dashboards are “customizable...

Research

We are passionate about developing computational techniques that accelerate the discovery of new medicines, and we work across all disease areas, from cancer and psychiatric disease to rare disorders and infectious disease. A major focus is image-based profiling: we invented CellProfiler and the...