CellProfiler Analyst
Official website for open source software CellProfiler Analyst
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Publications
Selected publications and preprints Nadig, A., Replogle, J. M., Pogson, A. N., McCarroll, S. A., Weissman, J. S., Robinson, E. B., & O'Connor, L. J. (2024). Transcriptome-wide characterization of genetic perturbations. bioRxiv, 2024-07. Salehi Nowbandegai, P.*, Wohns, A. W.*, …, Neale, B. M. & O...
Pan Group
The Pan Group in the Stanley Center for Psychiatric Research focuses on translating emerging human genetics into biological insights that can be turned into potential novel therapeutics for major psychiatric illnesses including schizophrenia and bipolar disorders.
Anna Greka MD, PHD
Photo credit: Martin Adolfsson Associate Professor Harvard Medical School Brigham and Women’s Hospital Institute Member Director Kidney Disease Initiative Broad Institute of MIT and Harvard With a focus on laying the foundation for molecularly targeted therapies, Anna’s scientific work is centered...
Introducing Piximi Annotator, an easily accessible, user-friendly annotator tool
Alice Lucas We’re delighted to release Piximi Annotator, a new image annotation tool that we built to be easily accessible, easy to use, yet with a full complement of annotation tools to allow for specific, refined annotations. Annotations are useful when training machine learning models to...
New CellProfiler 4 Plugin: RunCellpose
David R. Stirling Hi everyone, Today we’re releasing the RunCellpose plugin for CellProfiler 4! This plugin is designed to allow you to use the popular Cellpose segmentation algorithm to generate object sets within a CellProfiler pipeline. Cellpose uses a neural network followed by post-processing...
FATTY ACID SYNTHESIS IS REQUIRED FOR BREAST CANCER BRAIN METASTASIS
Ferraro, Gino B, Ahmed Ali, Alba Luengo, David P Kodack, Amy Deik, Keene L Abbott, Divya Bezwada, et al. 2021. “FATTY ACID SYNTHESIS IS REQUIRED FOR BREAST CANCER BRAIN METASTASIS”. Nat Cancer 2 (4): 414-28.
Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity
Sorek, Matan, Walaa Oweis, Malka Nissim-Rafinia, Moria Maman, Shahar Simon, Cynthia C. Hession, Xian Adiconis, et al. 2021. “Pluripotent Stem Cell-Derived Models of Neurological Diseases Reveal Early Transcriptional Heterogeneity”. Genome Biology .
➜ Greka Lab Braf/CoQ podocyte paper accepted at JCI!
Congrats Eriene-Heidi Sidhom, Choah Kim, Masha Alimova and the rest of the team on the acceptance of their Braf/CoQ podocyte paper at JCI today!
Anne Carpenter featured in "Automating Drug Discovery With Machine Learning"
Technology Networks recently published "Automating Drug Discovery With Machine Learning" by Neeta Ratanghayra and featured a section on image-based profiling for drug discovery. COBA's Anne Carpenter was featured and spoke about image-based profiling in general as well as the use of machine learning...