Alexandr Kalinin
I am a Postdoctoral Associate in the image-based profiling team. I'm interested in developing machine learning methods for studying cellular organization and improving disease diagnosis and treatment.
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Machine learning enables new insights into genetic contributions to liver fat accumulation
Haas, Mary E., James P. Pirruccello, Samuel N. Friedman, Minxian Wang, Connor A. Emdin, Veeral H. Ajmera, Tracey G. Simon, et al. 2021. “Machine Learning Enables New Insights into Genetic Contributions to Liver Fat Accumulation”. Cell Genomics 1 (3): 100066.
A Deep Learning Model for Inferring Elevated Pulmonary Capillary Wedge Pressures From the 12-Lead Electrocardiogram
Schlesinger, Daphne E., Nathaniel Diamant, Aniruddh Raghu, Erik Reinertsen, Katherine Young, Puneet Batra, Eugene Pomerantsev, and Collin M. Stultz. 2022. “A Deep Learning Model for Inferring Elevated Pulmonary Capillary Wedge Pressures From the 12-Lead Electrocardiogram”. JACC: Advances 1 (1): 100003.
Sam Freesun Friedman
Sam is a Machine Learning Scientist in the Data Sciences platform at the Broad Institute. He received a BS in Electric Media and Obsolescence at Hunter College and a PhD in Computer Science at the Graduate Center at the City University of New York. His thesis presented algorithms for object...
*NEW* Video Tutorials
We have added FIVE new video tutorials to our YouTube Channel! Two CellProfiler CZI workshops Two ImageJ CZI workshops CellProfiler "NamesAndTypes" video tutorial: Blog to guide you with this tutorial
Patient contrastive learning: A performant, expressive, and practical approach to electrocardiogram modeling
Diamant, Nathaniel, Erik Reinertsen, Steven Song, Aaron D. Aguirre, Collin M. Stultz, and Puneet Batra. 2022. “Patient Contrastive Learning: A Performant, Expressive, and Practical Approach to Electrocardiogram Modeling”. PLOS Computational Biology 18 (2): e1009862.
Genetic Analysis of Right Heart Structure and Function in 40,000 People
Pirruccello, James P., Paolo Di Achille, Victor Nauffal, Mahan Nekoui, Samuel N. Friedman, Marcus D. R. Klarqvist, Mark D. Chaffin, et al. 2021. “Genetic Analysis of Right Heart Structure and Function in 40,000 People”. BioRxiv, 2021.02.05.429046.
Abstract 10389: Identifying High-Risk Clinical Phenogroups of Pulmonary Hypertension Through a Clustering Analysis
Rambarat, Paula, Emily K Zern, Dongyu Wang, Shahrooz Zarbafian, Elizabeth E Liu, Jessica K Wang, Jenna N McNeill, et al. 2021. “Abstract 10389: Identifying High-Risk Clinical Phenogroups of Pulmonary Hypertension Through a Clustering Analysis”. Circulation 144 (Suppl\_1): A10389—A10389.
Genetics of Myocardial Interstitial Fibrosis in the Human Heart and Association with Disease
Nauffal, Victor, Paolo Di Achille, Marcus. D. R. Klarqvist, Jonathan W. Cunningham, James P. Pirruccello, Lu-Chen Weng, Valerie N. Morrill, et al. 2021. “Genetics of Myocardial Interstitial Fibrosis in the Human Heart and Association With Disease.”
Cohort Design and Natural Language Processing to Reduce Bias in Electronic Health Records Research: The Community Care Cohort Project
Khurshid, Shaan, Christopher Reeder, Lia X. Harrington, Pulkit Singh, Gopal Sarma, Samuel F. Friedman, Paolo Di Achille, et al. 2021. “Cohort Design and Natural Language Processing to Reduce Bias in Electronic Health Records Research: The Community Care Cohort Project”. MedRxiv, 2021.05.26.21257872.