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Puneet Batra

Person: Director, Machine Learning, DSP

Puneet Batra is a machine learning scientist, software engineer, and physicist at the Broad Institute of MIT and Harvard. Batra leads the Machine Learning For Health group at the Broad, which leverages machine learning for biological discovery and clinical impact. After an academic career as a...

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DNA-based copy number analysis confirms genomic evolution of PDX models

Publication: Journal Article

Hoge, Anna C H, , Anat Zimmer, Minjeong Ko, Linoy Raz, Rameen Beroukhim, Todd R Golub, Gavin Ha, and Uri Ben David. 2022. “DNA-Based Copy Number Analysis Confirms Genomic Evolution of PDX Models”. NPJ Precis Oncol 6 (1): 30.

AKT inhibition in the central nervous system induces signaling defects resulting in psychiatric symptomatology

Publication: Manuscript

Tsimberidou, Apostolia-Maria. 2022. “AKT Inhibition in the Central Nervous System Induces Signaling Defects Resulting in Psychiatric Symptomatology.”

Learning representations for image-based profiling of perturbations

Publication: Web Article

Moshkov, Nikita, Michael Bornholdt, Santiago Benoit, Matthew Smith, Claire McQuin, Allen Goodman, Rebecca Senft, et al. 2022. “Learning Representations for Image-Based Profiling of Perturbations”. BioRxiv. 2022.

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Publication: Website

Hallman, Mitchell, Adam Driscoll, Ryan Lubbe, and . 2020. “Lorem Ipsum Dolor Sit Amet, Consectetur Adipiscing Elit, Sed Do Eiusmod Tempor Incididunt Ut Labore et Dolore Magna Aliqua.”

Caveolae in CNS arterioles mediate neurovascular coupling.

Publication: Journal Article

Chow, Brian W, Vicente Nuñez, Luke Kaplan, Adam J Granger, Karina Bistrong, Hannah L Zucker, Payal Kumar, Bernardo L Sabatini, and Chenghua Gu. 2020. “Caveolae in CNS Arterioles Mediate Neurovascular Coupling.”. Nature 579 (7797): 106-10.

The LGI1-ADAM22 protein complex directs synapse maturation through regulation of PSD-95 function.

Publication: Journal Article

Lovero, Kathryn L, Yuko Fukata, Adam J Granger, Masaki Fukata, and Roger A Nicoll. 2015. “The LGI1-ADAM22 Protein Complex Directs Synapse Maturation through Regulation of PSD-95 Function.”. Proceedings of the National Academy of Sciences of the United States of America 112 (30): E4129-37.

Customizing a Model for Fiber Segmentation, Part 2: Creating an ilastik Model

Blog: August 05, 2022

Melissa Gillis In the first part of this blogpost I described some of the tools I tried to accurately segment collagen IV fibers including, CellProfiler, Cellpose, and Piximi. Unfortunately none of these methods were successful in accurately segmenting the fibers so I decided to develop a machine...