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Evaluating the role of pre-training dataset size and diversity on single-cell foundation model performance

Publication: Journal Article

DenAdel, Alan, Madeline Hughes, Akshaya Thoutam, Anay Gupta, Andrew W. Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, and Lorin Crawford. 2024. “Evaluating the Role of Pre-Training Dataset Size and Diversity on Single-Cell Foundation Model Performance”. BioRxiv.

F. William Studier was born in 1936 in Waverly, Iowa and went to Yale (BS, Biophysics, 1958), Caltech (PhD, Biophysics, 1963), and Stanford University for postdoctoral research in biochemistry. In 1964 he joined the biology department in Brookhaven National Laboratory, which he chaired from 1990...

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

Publication: Journal Article

D’Ascenzo, Davide, and Sebastiano Cultrera_di_Montesano. 2025. “ScDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics”. ArXiv.

Gaïa-Marie Gerbaka

Person: MLSC Intern

I'm a summer intern pursuing my Master's of Biomedical Informatics degree at Harvard Medical School. I'm focusing on harmonizing the Cell Painting Gallery, as well as assessing various cell segmentation methodologies.

Chukwudumebi Okonkwo

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Lanjing Wei

Person: Postdoctoral Associate, Dana Farber Cancer Institute

Langjing Wei, PhD

Publications

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https://www.ncbi.nlm.nih.gov/myncbi/seungmin.hwang.1/bibliography/public/ 68. Soriaga L, Balce D, Bartha I, Park A, Wong E, McAllaster M, Mueller EA, Barauskas O, Carabajal E, Kowalski B, Lee S, Lo G, Mahoney TF, Metruccio M, Sahakyan A, Somasundaram L, Steinfeld T, Wang L, Wedel L, Yim SS, Yin L...

Kaio de Souza Gomes

Person: Visiting Postdoctoral Scholar

I am a visiting postdoctoral researcher from the Universidade Federal do ABC (UFABC) in Brazil, with a background in Organic Chemistry and Biochemistry, and a strong interest in fluorescence microscopy. My research focuses on understanding the behavior of endometrial cells under various stress...