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Broad Institute Eligendi Theme
COBA
The Center for Open Bioimage Analysis
Using seqr
Resources
Depmap MetMap Drug Repurposing FireBrowse Cancer Cell Line Encyclopedia FireCloud Cancer Cell Line Factory Genome Data Analysis Center (GDAC) Project Achilles Gene Set Enrichment Analysis (GSEA) Connectivity Map Matrisome Project Clue Connectopedia Molecular Signatures Database (MSigDB) LINCS...
Eligendi (presets)
Eligendi themes with presets VIEW ELIGENDI SITE
Theme three
Theme Three VIEW THEME THREE SITE
Reconstructing signaling pathways using regular language constrained paths
Wagner, Mitchell, Aditya Pratapa, and Murali. 2019. “Reconstructing Signaling Pathways Using Regular Language Constrained Paths”. Bioinformatics 35 (14): i624-i633.
CrossPlan: systematic planning of genetic crosses to validate mathematical models
Pratapa, Aditya, Neil Adames, Pavel Kraikivski, Nicholas Franzese, John Tyson, Jean Peccoud, and Murali. 2018. “CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models”. Bioinformatics 34 (13): 2237-44.
Algorithms for regulatory network inference and experiment planning in systems biology
Pratapa, Aditya. 2020. “Algorithms for Regulatory Network Inference and Experiment Planning in Systems Biology”. Department of Computer Science.