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Wagner, Mitchell, Aditya Pratapa, and Murali. 2019. “Reconstructing Signaling Pathways Using Regular Language Constrained Paths”. Bioinformatics 35 (14): i624-i633.

Pratapa, Aditya, Neil Adames, Pavel Kraikivski, Nicholas Franzese, John Tyson, Jean Peccoud, and Murali. 2018. “CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models”. Bioinformatics 34 (13): 2237-44.

Pratapa, Aditya. 2020. “Algorithms for Regulatory Network Inference and Experiment Planning in Systems Biology”. Department of Computer Science.

Malone, Clare F., Neekesh V. Dharia, Guillaume Kugener, Alexandra B. Forman, Michael V. Rothberg, Mai Abdusamad, Alfredo Gonzalez, et al. 2021. “Selective Modulation of a Pan-Essential Protein As a Therapeutic Strategy in Cancer”. Cancer Discov.

Coulter, Ian, Tamara Timic Stamenic, Pierce Eggan, Brier R Fine, Timothy Corrigan, Douglas F Covey, Lingling Yang, Jen Q Pan, and Slobodan M Todorovic. 2021. “Different Roles of T-Type Calcium Channel Isoforms in Hypnosis Induced by an Endogenous Neurosteroid Epipregnanolone”. Neuropharmacology.

Xiong, Kan, Douglas Shea, Justin Rhoades, Timothy Blewett, Ruolin Liu, Jin H Bae, Erica Nguyen, Mike Makrigiorgos, Todd R Golub, and Viktor A Adalsteinsson. 2021. “Duplex-Repair Enables Highly Accurate Sequencing, Despite DNA Damage”. Nucleic Acids Res 50 (1).

Prensner, JR, OM Enache, Luria, Krug, KR Clauser, JM Dempster, Karger, et al. 2021. “Noncanonical Open Reading Frames Encode Functional Proteins Essential for Cancer Cell Survival”. Nature Biotechnology.