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Leveraging advanced segmentation models in CellProfiler with RunCellpose and RunStarDist
Segmentation is an integral step of any bioimage analysis workflow, which involves delineating areas or objects of interest within an image 1 . All the measurements performed on the image, e.g. size, shape, counts, or pixel intensities are then assigned to these segmented areas or objects to...
Brain-region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice
Farsi, Zohreh, and Morgan H Sheng. 2023. “Brain-Region-Specific Changes in Neurons and Glia and Dysregulation of Dopamine Signaling in Grin2a Mutant Mice”. Neuroresource.
Docker for Biologists
Docker is discussed in the bioimage analysis world a lot these days. But what are dockers? How does Docker make life easier? In this blog post, I will try to explain the basics of docker and why it matters to biologists. Have you ever faced package dependency issues when creating Python environments...
Horia Pribiag, Ph.D.
he/him
Choushi Wang
I am a postdoctoral associate with a research focus on the tumor microenvironment, investigating strategies to manipulate it for therapeutic benefit.
Chuhan Geng
she/her
Kate Bowers
I am a Computational Associate II at the Cimini lab. I am passionate about designing and using computational systems to make biological research easier and more accessible to all scientists. In the Cimini lab, I enjoy learning new ways to pull useful quantitative data from beautiful microscopy...