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CellProfiler Analyst Stable (3.0.4): macOS (supports Mac Monterey, v12+) macOS (supports Mac v10.15-11) Windows Source code available on Github Previous CellProfiler Analyst releases

How to cite CellProfiler Analyst CellProfiler Analyst 3.0: Accessible data exploration and machine learning for image analysis. by David R. Stirling, Anne E. Carpenter, and Beth A. Cimini (2021), Bioinformatics, doi or CellProfiler Analyst: interactive data exploration, analysis, and classification...

CellProfiler Analyst in a nutshell CellProfiler Analyst (CPA) allows interactive exploration and analysis of data, particularly from high-throughput, image-based experiments. Its most popular feature is a supervised machine learning system ("Classifier") that can be trained to recognize complicated...

CellProfiler-Analyst requires a 64bit-Java 8 Java Development Kit (JDK), a special version of Java that allows CPA to open microscope images from many different vendors using the BioFormats library. You will need to install this software and configure your computer to run it properly. Step 0: Check...

Technical descriptions of CellProfiler and CellProfiler Analyst software can be found in our papers. For all CellProfiler tutorials, visit our YouTube playlist.

The properties file is a plain text file that contains the configuration information necessary for CPA to access your data and images. This file can be stored anywhere on your computer. It is selected and loaded upon startup of CPA. If you use CellProfiler to produce the data to be analyzed in CPA...

CPA releases All CellProfiler-Analyst releases can be found here Prerequisites Install JDK 1.8 and Java II.A Mac OS X Open dmg file and copy CellProfiler-Analyst.app to /Applications. II.B Windows 7 Run the setup.exe to create the executable and shortcuts. II.C Using the example dataset Download the...