JUMP Cell Painting protocol (v3) in press
The newly optimized version 3 of the protocol has been accepted! It is in press at Nature Protocols as Cimini et al. 2023.
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Two publicly available portals to explore the data
Ardigen’s phenAID portal The phenAID JUMP-CP Explorer was created by the Ardigen Data Science and Software Development team to enable easy access and visualization of JUMP-CP data. The web-based application shows a phenotypic and structural representation of the data set colored by clusters. Users...
Data release & Manuscript in BioRxiv
We are excited to share that the JUMP Cell Painting Datasets now include most data components from all but one of the sources for the principal dataset (cpg0016), covering 116,000 chemical and over 20,000 genetic perturbations (covering ~15,000 genes). The first draft of metadata files are available...
JUMP-Cell Painting Consortium begins data release! Ardigen Supporting Partner added
Thank you to all involved! As this three year project comes to a close, the whole project team wants to extend a warm thank you to all involved: more than a hundred scientists worked in nine workstreams to design, execute, and share this dataset. It took expertise across cell biology, chemistry...
Nomic to Provide nELISA to JUMP Cell Painting Consortium
Protein profiling company Nomic announced in a press release today that it is providing access to the company’s nELISA TM platform to the Joint Undertaking in Morphological Profiling-Cell Painting (JUMP-CP) consortium. With this access, Nomic joins the JUMP-CP consortium as a Supporting Partner...
Cell Painting
The Carpenter lab and Schreiber lab at the Broad Institute of MIT and Harvard developed Cell Painting, a microscopy assay that generates images that reflect cell response to treatments such as drug or genetic perturbations, in high-throughput (at a scale of 100,000+ perturbations). The Carpenter lab...
Partners
The consortium was a collaboration between the Carpenter-Singh Lab, the Genetic Perturbation Platform, and the Center for the Development of Therapeutics at the Broad Institute of MIT and Harvard along with industry and non-profit partners that were committed to creating a public Cell Painting...