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Previously Released Versions of CellProfiler Analyst
Release Version Platform 3.0.4 Mac (up to OSX11), Mac (OSX12+) Windows 3.0.2 Mac Windows 2.2.1 Mac* Windows 2.0, r11710 Mac Windows 2.0, r11306 Mac Windows 2.0, r10530 Mac Windows 2.0, r9128 Mac WindowsXP 2.0, r8634 WindowsXP 2.0, r8582 Mac 1.1 Linux Mac WindowsXP 1.0 Linux Mac WindowsXP *(only...
Pharmacogenomic agreement between two cancer cell line data sets
Cancer Cell Line Encyclopedia Consortium, and Genomics of Drug Sensitivity in Cancer Consortium. 2015. “Pharmacogenomic Agreement Between Two Cancer Cell Line Data Sets”. Nature 528 (7580): 84-7.
Quantitative Proteomics of the Cancer Cell Line Encyclopedia
Nusinow, David, John Szpyt, Mahmoud Ghandi, Christopher Rose, Robert McDonald, Marian Kalocsay, Judit Jané-Valbuena, et al. 2020. “Quantitative Proteomics of the Cancer Cell Line Encyclopedia”. Cell 180 (2): 387-402.e16.
Domain to Data: Carpenter shares her journey from biologist towards computer science
Today, Cell Press journal Patterns published a feature by COBA's own Dr. Anne Carpenter in their "People of Data" series discussing her transition from being a biologist to leading an entirely computational group. In the piece, Carpenter offers great insight for those who may be considering a...
Resources
Next-generation characterization of the Cancer Cell Line Encyclopedia
Ghandi, Mahmoud, Franklin Huang, Judit Jané-Valbuena, Gregory Kryukov, Christopher Lo, Robert McDonald, Jordi Barretina, et al. 2019. “Next-Generation Characterization of the Cancer Cell Line Encyclopedia”. Nature 569 (7757): 503-8.
The landscape of cancer cell line metabolism
Li, Haoxin, Shaoyang Ning, Mahmoud Ghandi, Gregory Kryukov, Shuba Gopal, Amy Deik, Amanda Souza, et al. 2019. “The Landscape of Cancer Cell Line Metabolism”. Nat Med 25 (5): 850-60.
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Tools
Tools for CCLE Data Visualization and Analysis Integrated views of Dependency datasets with Cell line characterizations can be found on the DepMap portal CLiFF - a tool for comparing Difference between groups of cell lines Visualization of CCLE data in cBioPortal