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Our main research theme is empowering biologists with easy-to-use, comprehensively documented tools that facilitate discovery from biological images. From organelles to organisms, we create tools and workflows that allow biologists to find the objects they care about in microscopy images and...

CellProfiler CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. More information can be found in the CellProfiler Wiki. Download CellProfiler...

The Postdoctoral Training Program in Bioimage Analysis is an opportunity for biologists with strong interest and some experience in image analysis to develop deeper skills through many different individual projects as well as by supporting thousands of researchers around the world who are...

Selected publications and preprints Nadig, A., Replogle, J. M., Pogson, A. N., McCarroll, S. A., Weissman, J. S., Robinson, E. B., & O'Connor, L. J. (2024). Transcriptome-wide characterization of genetic perturbations. bioRxiv, 2024-07. Salehi Nowbandegai, P.*, Wohns, A. W.*, …, Neale, B. M. & O...

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