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Software and code

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CellProfiler CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. More information can be found in the CellProfiler Wiki. Download CellProfiler...

Lazaris - Curriculum Vitae

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Lazaris - GitHub website

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Massachusetts Institute of Technology (MIT)

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Young Laboratory at the Whitehead Institute

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CellProfiler 4.2 Release

Blog: June 24, 2021

David R. Stirling Hi all, We’ve now released CellProfiler 4.2! You can download it from https://cellprofiler.org/releases. We have a few new features and improvements in this release. There have been numerous smaller bug fixes, but the key changes are as follows: We’ve fixed an issue which was...

Thinking like an image analyst, Part III: Enhancing fibers for detection

Blog: September 01, 2021

Pearl V. Ryder In the previous blog post in this series, I demonstrated how I masked out debris that was brighter than the fibers of interest. In this post, I’ll walk through how I enhanced the fibers in order to increase their brightness and decreased the background intensity of the images. If you...

John Arévalo

Person: Postdoctoral Associate

I am interested in the application of machine learning methods to uncovering causes and treatments for disease using heterogeneous biological data.

Team

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After seven wonderful years at the Broad Institute (2016-2023), I have started a new exciting career journey in Madison, WI. Our research group is now at the Morgridge Institute for Research and the University of Wisconsin—Madison. Learn more: https://morgridge.org/research/labs/caicedo/

People

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