Heejo Choi
I am a computational biologist interested in the integration, interpretation, and visualization of data elucidating cancer dependencies in the context of the tumor microenvironment.
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Congrats to Jose Diego, Vijay and team on the publication of their tour de force base editing paper in Cell!
Massively parallel base editing to map variant effects in human hematopoiesis. Martin-Rufino JD, Castano N, Pang M, Grody EI, Joubran S, Caulier A, Wahlster L, Li T, Qiu X, Riera-Escandell AM, Newby GA, Al'Khafaji A, Chaudhary S, Black S, Weng C, Munson G, Liu DR, Wlodarski MW, Sims K, Oakley JH...
Deep proteomics identifies shared molecular pathway alterations in synapses of patients with schizophrenia and bipolar disorder and mouse model.
Aryal, Sameer, Kevin Bonanno, Bryan Song, D R Mani, Hasmik Keshishian, Steven A Carr, Morgan Sheng, and Borislav Dejanovic. 2023. “Deep Proteomics Identifies Shared Molecular Pathway Alterations in Synapses of Patients With Schizophrenia and Bipolar Disorder and Mouse Model.”. Cell Reports 42 (5): 112497.
Which single cell technology is best?
Jason, Luca and others weigh on on which single cell technology is best (for which application...?) in a Nature Technology Feature: https://www.nature.com/articles/d41586-022-04426-5
Best Practices for Jupyter Notebook
When you are new to the coding world, a lot of new information can be overwhelming. Staying organized might help ease the learning process. This blog post is about simple ways to organize your Jupyter notebooks to make them more reproducible and user-friendly. First, let me begin by introducing the...
Microscopy in the cloud: CellProfiler and Cell Painting on Terra
Microscopy in the cloud: CellProfiler and Cell Painting on Terra Authors: Carmen Diaz Verdugo, Stephen Fleming, Nicole Deflaux and Amy Unruh Carmen Diaz Verdugo is a Computational Scientist in the Precision Cardiology Lab, and a member of Patrick Ellinor’s group. Stephen Fleming is a Senior Machine...
Dr. Anthony Wilder Wohns
Molecular mechanisms of schizophrenia: Insights from human genetics.
Farsi, Zohreh, and Morgan Sheng. 2023. “Molecular Mechanisms of Schizophrenia: Insights from Human Genetics.”. Current Opinion in Neurobiology 81: 102731.