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Najm, Fadi J, Peter DeWeirdt, Molly M Moore, Samantha M Bevill, Chadi A El Farran, Kevin A Macias, Mudra Hegde, et al. 2023. “Chromatin Complex Dependencies Reveal Targeting Opportunities in Leukemia.”. Nature Communications 14 (1): 448.

Battaglia, Sofia, Kevin Dong, Jingyi Wu, Zeyu Chen, Fadi J Najm, Yuanyuan Zhang, Molly M Moore, Vivian Hecht, Noam Shoresh, and Bradley E Bernstein. 2022. “Long-Range Phasing of Dynamic, Tissue-Specific and Allele-Specific Regulatory Elements.”. Nature Genetics 54 (10): 1504-13.

Miller, Tyler E, Caleb A Lareau, Julia A Verga, Erica A K DePasquale, Vincent Liu, Daniel Ssozi, Katalin Sandor, et al. 2022. “Mitochondrial Variant Enrichment from High-Throughput Single-Cell RNA Sequencing Resolves Clonal Populations.”. Nature Biotechnology 40 (7): 1030-34.

Uzquiano, Ana, Amanda J Kedaigle, Martina Pigoni, Bruna Paulsen, Xian Adiconis, Kwanho Kim, Tyler Faits, et al. 2022. “Proper Acquisition of Cell Class Identity in Organoids Allows Definition of Fate Specification Programs of the Human Cerebral Cortex.”. Cell 185 (20): 3770-3788.e27.

de Goede, Olivia M, Daniel C Nachun, Nicole M Ferraro, Michael J Gloudemans, Abhiram S Rao, Craig Smail, Tiffany Y Eulalio, et al. 2021. “Population-Scale Tissue Transcriptomics Maps Long Non-Coding RNAs to Complex Disease.”. Cell 184 (10): 2633-2648.e19.

Pernice, Wolfgang M., Michael Doron, Alex Quach, Aditya Pratapa, Sultan Kenjeyev, Nicholas De Veaux, Michio Hirano, and Juan C. Caicedo. 2023. “Out of Distribution Generalization via Interventional Style Transfer in Single-Cell Microscopy”. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops.

Mangiameli, Sarah M, Haiqi Chen, Andrew S Earl, Julie A Dobkin, Daniel Lesman, Jason D Buenrostro, and Fei Chen. 2023. “Photoselective Sequencing: Microscopically Guided Genomic Measurements With Subcellular Resolution.”. Nature Methods 20 (5): 686-94.

Joung, Julia, Sai Ma, Tristan Tay, Kathryn R Geiger-Schuller, Paul C Kirchgatterer, Vanessa K Verdine, Baolin Guo, et al. 2023. “A Transcription Factor Atlas of Directed Differentiation.”. Cell 186 (1): 209-229.e26.

Rozowsky, Joel, Jiahao Gao, Beatrice Borsari, Yucheng T Yang, Timur Galeev, Gamze Gürsoy, Charles B Epstein, et al. 2023. “The EN-TEx Resource of Multi-Tissue Personal Epigenomes & Variant-Impact Models.”. Cell 186 (7): 1493-1511.e40.

Cancellieri, Samuele, Jing Zeng, Linda Yingqi Lin, Manuel Tognon, My Anh Nguyen, Jiecong Lin, Nicola Bombieri, et al. 2023. “Human Genetic Diversity Alters Off-Target Outcomes of Therapeutic Gene Editing.”. Nature Genetics 55 (1): 34-43.