Scanning mutagenesis of the voltage-gated sodium channel NaV1.2 using base editing Publication: Journal Article Pablo, Juan Lorenzo B. 2024. “Scanning Mutagenesis of the Voltage-Gated Sodium Channel NaV1.2 Using Base Editing”. Cell Reports.
TRPA5 encodes a thermosensitive ankyrin ion channel receptor in a triatomine insect Publication: Journal Article Liénard, Marjorie A. 2024. “TRPA5 encodes a Thermosensitive Ankyrin Ion Channel Receptor in a Triatomine Insect”. IScience.
Sources of Variation in the Spectral Slope of the Sleep EEG Publication: Journal Article Kozhemiako, Nataliia. 2023. “Sources of Variation in the Spectral Slope of the Sleep EEG”. ENeuro.
Evaluating the role of pre-training dataset size and diversity on single-cell foundation model performance Publication: Journal Article DenAdel, Alan, Madeline Hughes, Akshaya Thoutam, Anay Gupta, Andrew W. Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, and Lorin Crawford. 2024. “Evaluating the Role of Pre-Training Dataset Size and Diversity on Single-Cell Foundation Model Performance”. BioRxiv.
scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics Publication: Journal Article D’Ascenzo, Davide, and Sebastiano Cultrera_di_Montesano. 2025. “ScDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics”. ArXiv.
Next-generation characterization of the Cancer Cell Line Encyclopedia Publication: Journal Article Ghandi, Mahmoud, Franklin Huang, Judit Jané-Valbuena, Gregory Kryukov, Christopher Lo, Robert McDonald, Jordi Barretina, et al. 2019. “Next-Generation Characterization of the Cancer Cell Line Encyclopedia”. Nature 569 (7757): 503-8.
The landscape of cancer cell line metabolism Publication: Journal Article Li, Haoxin, Shaoyang Ning, Mahmoud Ghandi, Gregory Kryukov, Shuba Gopal, Amy Deik, Amanda Souza, et al. 2019. “The Landscape of Cancer Cell Line Metabolism”. Nat Med 25 (5): 850-60.
Oncogenic Hijacking of the Stress Response Machinery in T cell Acute Lymphoblastic Leukemia Publication: Journal Article Kourtis, Nikos, Charalampos Lazaris, Kathryn Hockemeyer, Juan Carlos Balandrán, Alejandra R. Jimenez, Jasper Mullenders, Yixiao Gong, et al. 2018. “Oncogenic Hijacking of the Stress Response Machinery in T Cell Acute Lymphoblastic Leukemia”. Nat Med 24: 1157-66.
Stratification of TAD Boundaries Reveals Preferential Insulation of Super-enhancers by Strong Boundaries Publication: Journal Article Gong, Yixiao, Charalampos Lazaris, Theodore Sakellaropoulos, Aurelie Lozano, Prabhanjan Kambadur, Panagiotis Ntziachristos, Iannis Aifantis, and Aristotelis Tsirigos. 2018. “Stratification of TAD Boundaries Reveals Preferential Insulation of Super-Enhancers by Strong Boundaries”. Nat Commun 9: 542-42.
Low-Grade Astrocytoma Mutations in IDH1, P53, and ATRX Cooperate to Block Differentiation of Human Neural Stem Cells via Repression of SOX2 Publication: Journal Article Modrek, Aram S., Danielle Golub, Themasap Khan, Devin Bready, Jod Prado, Christopher Bowman, Jingjing Deng, et al. 2017. “Low-Grade Astrocytoma Mutations in IDH1, P53, and ATRX Cooperate to Block Differentiation of Human Neural Stem Cells via Repression of SOX2”. Cell Rep 21: 1267-80.