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Green, M. R., S. Monti, R. Dalla-Favera, L. Pasqualucci, N. C. Walsh, M. Schmidt-Supprian, J. L. Kutok, et al. 2011. “Signatures of Murine B-Cell Development Implicate Yy1 As a Regulator of the Germinal Center-Specific Program”. Proc Natl Acad Sci U S A 108: 2873-8.

Hartwell, K. A., P. G. Miller, S. Mukherjee, A. R. Kahn, A. L. Stewart, D. J. Logan, J. M. Negri, et al. 2013. “Niche-Based Screening Identifies Small-Molecule Inhibitors of Leukemia Stem Cells”. Nat Chem Biol 9: 840-48.

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Hoshida, Y., S. M. Nijman, M. Kobayashi, J. A. Chan, J. P. Brunet, D. Y. Chiang, A. Villanueva, et al. 2009. “Integrative Transcriptome Analysis Reveals Common Molecular Subclasses of Human Hepatocellular Carcinoma”. Cancer Res 69: 7385-92.

Hoshida, Y., A. Villanueva, A. Sangiovanni, M. Sole, C. Hur, K. L. Andersson, R. T. Chung, et al. 2013. “Prognostic Gene Expression Signature for Patients With Hepatitis C-Related Early-Stage Cirrhosis”. Gastroenterology 144: 1024-30.

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Moshkov, Nikita, Tim Becker, Kevin Yang, Peter Horvath, Vlado Dančik, Bridget K Wagner, Paul Clemons, Shantanu Singh, Anne E Carpenter, and Juan Caicedo. 2023. “Predicting Compound Activity from Phenotypic Profiles and Chemical Structures”. Nature Communications.

Doron, Michael, Hussein Mozannar, David Sontag, and Juan C. Caicedo. 2021. “Machine Teaching With Generative Models for Human Learning”. In The International Conference on Machine Learning.