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Collaborate

Need help with image analysis? The first step is to post in the Scientific Community Image Forum under the COBA tag. The COBA team and members of the community can help answer questions, so this is a great resource for most of your imaging analysis problems If posting there doesn't answer your...

More info

Frequently Asked Questions (FAQ) Is it too late to join? Yes, the Consortium has finished its work optimizing, producing data, and publicly releasing it. There are two new Consortia to consider: OASIS (‘Omics for Assessing Signatures for Integrated Safety): Together with HESI, we aim to test Cell...

Data Transfer

Sequencing data produced by the Broad CMG will be made available to collaborators upon request with the required contingency that phenotype information is entered on seqr. Please note we are only able to return data to the investigator that initiated this collaboration, as well as relevant study...

Papers

For our latest work, check out our preprints on bioRxiv! ( Carpenter) ( Singh) Google Scholar pages (with citation metrics): ( Carpenter) ( Singh) 198. Seal S, Trapotsi MA, Spjuth O, Singh S, Carreras-Puigvert J, Greene N, Bender A, Carpenter AE. (2024) Cell Painting: a decade of discovery and...

Press from the Imaging Platform (Carpenter-Singh and Cimini labs)

Impact of CellProfiler on human health Our CellProfiler software has yielded discoveries in several translational projects, some of which may ultimately have a direct impact on the treatment of disease [ read more here]. Public videos of talks and PDF slides Links to PDFs of slides from recent talks...

Human U2OS Cells – profiling bioactive compounds using Cell Painting

Accession number BBBC036 · Version 1 Example images Description of the biological application Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This...

Impact on Human Health

Our CellProfiler software has yielded discoveries in several translational projects, some of which have had a direct impact on the treatment of disease. For example, CellProfiler has been used to identify several small molecules that are effective in treating particular diseases in mouse models. In...