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The properties file is a plain text file that contains the configuration information necessary for CPA to access your data and images. This file can be stored anywhere on your computer. It is selected and loaded upon startup of CPA. If you use CellProfiler to produce the data to be analyzed in CPA...

Frequently Asked Questions (FAQ) Is it too late to join? Yes, the Consortium has finished its work optimizing, producing data, and publicly releasing it. There are two new Consortia to consider: OASIS (‘Omics for Assessing Signatures for Integrated Safety): Together with HESI, we aim to test Cell...

Sequencing data produced by the Broad CMG will be made available to collaborators upon request with the required contingency that phenotype information is entered on seqr. Please note we are only able to return data to the investigator that initiated this collaboration, as well as relevant study...

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Accession number BBBC001 · Version 1 Example image Biological application These images are of human HT29 colon cancer cells, a cell line that has been widely used for the study of many normal and neoplastic processes. For instance, Moffat et al. ( Cell, 2006) screened a set of about 43,000 such...

Accession number BBBC004· Version 1 Example images Image Foreground Biological application One of the principal challenges in counting or segmenting nuclei is dealing with clustered nuclei. To help assess algorithms' performance in this regard, this synthetic image set consists of five subsets with...

Accession number BBBC009 · Version 1 Example images DIC image Ground truth Images This image set consists of five differential interference contrast (DIC) images of red bood cells. BBBC009_v1_images.zip (1.2 MB) Ground truth BBBC009_v1_outlines.zip (86 kB) There are two options when using this data...