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6 results found

Sara Khosravi

Person: Visiting Scholar

I am currently a graduate student in Computer Science at the University of California, Los Angeles (UCLA), specializing in Deep Learning and Software Engineering. My interests include analyzing and programming biological systems through the application of deep learning tools and methods.

Leveraging advanced segmentation models in CellProfiler with RunCellpose and RunStarDist

Blog: June 12, 2024

Segmentation is an integral step of any bioimage analysis workflow, which involves delineating areas or objects of interest within an image 1 . All the measurements performed on the image, e.g. size, shape, counts, or pixel intensities are then assigned to these segmented areas or objects to...

Tim Treis

Person: Visiting Scholar

I'm a 2nd year PhD student at the Theislab in Munich, Germany. There, my primary focus is development of tools and resources for spatial multi-omics. At the Broad to learn more about xxx terabyte scale data and how we can use phenomics to better understand perturbations.

Hugo Hakem

Person: MLSC Intern

After graduating from UC Berkeley and Ecole Centrale Paris, I am currently an MLSC intern focusing on gaining biological insights from cell profiles using counterfactuals and deep learning tools. I am enthusiastic about utilizing my background in mathematics and computing to contribute to the drug...

Docker for Biologists

Blog: June 12, 2024

Docker is discussed in the bioimage analysis world a lot these days. But what are dockers? How does Docker make life easier? In this blog post, I will try to explain the basics of docker and why it matters to biologists. Have you ever faced package dependency issues when creating Python environments...

Jessica Ewald

Person: Postdoctoral Associate

I am interested in trying to predict and gain insights into adverse health outcomes in living organisms from rich cellular profiling data collected from in vitro experiments.