Jessica Ewald
I am interested in trying to predict and gain insights into adverse health outcomes in living organisms from rich cellular profiling data collected from in vitro experiments.
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Compiling collaborators for NSF Collaborators and Other Affiliations (COA) form
Authors: Beth Cimini, John Kitchin, Andrew Rosen, and Anne Carpenter What is the COA form? NSF requires you to report all “Co-authors on any book, article, report, abstract or paper with collaboration in the last 48 months” in Table 4 of the COA form, for certain people (e.g. PI, Co-PI, Senior/Key...
Leveraging advanced segmentation models in CellProfiler with RunCellpose and RunStarDist
Segmentation is an integral step of any bioimage analysis workflow, which involves delineating areas or objects of interest within an image 1 . All the measurements performed on the image, e.g. size, shape, counts, or pixel intensities are then assigned to these segmented areas or objects to...
Docker for Biologists
Docker is discussed in the bioimage analysis world a lot these days. But what are dockers? How does Docker make life easier? In this blog post, I will try to explain the basics of docker and why it matters to biologists. Have you ever faced package dependency issues when creating Python environments...
Johan Fredin Haslum
I am a Postdoctoral Fellow at the Imaging Platform. I am interested in applying and developing machine learning methods for analyzing and representing the rich information captured in high throughput imaging datasets.