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Help! I want to use CellProfiler Analyst but I ran my pipeline with ExportToSpreadsheet!
David R. Stirling We’ve all done this before – CellProfiler Analyst needs a database file, but your CellProfiler pipeline that took days to run was set up to export spreadsheets. To make matters worse, you also need a .properties file explaining what to do with that database. Fortunately, you don’t...
II. Installation and getting started
CPA releases All CellProfiler-Analyst releases can be found here Prerequisites Install JDK 1.8 and Java II.A Mac OS X Open dmg file and copy CellProfiler-Analyst.app to /Applications. II.B Windows 7 Run the setup.exe to create the executable and shortcuts. II.C Using the example dataset Download the...
Research
Research
'Genetic Engineering & Biotechnology News' Features JUMP-Cell Painting
Genetic Engineering & Biotechnology News today featured Dr. Anne Carpenter and her group at the Broad Institute for their work launching a Cell Imaging Consortium. The consortium includes 12 pharmaceutical and biotechnology companies and received funding through the Massachusetts Life Sciences...
'Nature Reviews Drug Discovery' news article on Cell Painting
The JUMP-Cell Painting Consortium is alluded to in the Nature Reviews Drug Discovery news item, " Machine learning brings cell imaging promises into focus". The article overviews the entire field of image-based profiling and phenotype discovery, including industry and academic developments.