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Manuals
Version Manual 3.0 [ HTML] 2.2.1 [ HTML] 2.0 [ PDF] 1.0 [ PDF]
Examples
CellProfiler Analyst Example Data and Properties File Example database, configuration file, and images: Single 96-well plate of human cellular images, for use with CellProfiler Analyst 2.0. More sample images and information on the image data can be found on the Broad Bioimage Benchmark Collection...
Introduction
CellProfiler Analyst (CPA) provides tools for classifying biological images and exploring and visualizing multidimensional data (particularly from high-throughput experiments) that has been extracted from companion image analysis software CellProfiler. CellProfiler Analyst’s primary tools: Image...
I. Preliminary data requirements
CPA requires access to the following data sources: An image table and an object table containing measurements and metadata These may reside in a MySQL or SQLite database or in a set of comma-separated value (CSV) files. A MySQL database is recommended, though you may need to consult with your local...
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Tools
Tools for CCLE Data Visualization and Analysis Integrated views of Dependency datasets with Cell line characterizations can be found on the DepMap portal CLiFF - a tool for comparing Difference between groups of cell lines Visualization of CCLE data in cBioPortal
'Genetic Engineering & Biotechnology News' Features Cell Imaging Consortium
Genetic Engineering & Biotechnology News today featured COBA's Anne Carpenter and her group at the Broad Institute for their work launching a Cell Imaging Consortium. The consortium includes 12 pharmaceutical and biotechnology companies and received funding through the Massachusetts Life Sciences...
FiloData3D - Single A549 cells with filopodia (synthetic image data)
Accession number BBBC046 · Version 1 Example images The synthetic time-lapse image data of a CRMP-2-phospho-defective cell for the given fluorescence level facto(F) and anisotropy ratio (AR). The synthetic image data of a CRMP-2-phospho-defective cell for varying anisotropy ratios (ARs). The...
From Images to Knowledge with ImageJ & Friends (Virtual) 2020
From Images to Knowledge with ImageJ & Friends (I2K) was originally scheduled for September 17-18, 2020 in Madison, WI. Due to travel restrictions, we are pleased to announce that our partners in the I2K series are holding an online version of the I2K meeting at HHMI Janelia this Nov 30-Dec 2, 2020...