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Mouse hippocampal presynaptic terminals (vGlut-1 and vGat)

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Accession number BBBC044 · Version 1 Example images Description of the biological application These images are of mouse hippocampal presynaptic terminals and the goal is to extract presynaptic terminals' densities. The presented seet of images were being used to validate the accuracy of automatic...

Human White Blood Cells

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Accession number BBBC045 · Version 1 Example images Description of the biological application This dataset is useful for measuring differential White Blood Cell Count. White blood cells play an important role in the immune system to protect against infections and diseases. There are 5 different...

Human HT29 colon-cancer cells shRNAi screen

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Accession number BBBC017 · Version 1 Example image Biological application These images are of human HT29 colon cancer cells, a cell line that has been widely used for the study of many normal and neoplastic processes. Moffat et al. (Cell, 2006) used the HT29 cell line to screen 4,903 shRNAi...

COBA and the future of dataset sharing

News: April 21, 2020
The Center for Open Bioimage Analysis was noted in a Technology Feature published today by Nature, particularly the Center's priority of sharing bioimaging data sets and deep-learning models. The piece, " Deep learning takes on tumours" by Esther Landhuis, also describes co-founder Anne Carpenter's...

COBA on YouTube

News: May 01, 2020
The Center for Open Bioimage Analysis is now on YouTube! Subscribe to be the first to see new COBA workshops and trainings. While you're there, don't forget to check out our playlists for helpful videos from CellProfiler, ImageJ, NEUBIAS, iBiology, and more!

Survey for image analysis needs — community input needed

News: May 13, 2020
COBA's mission is to serve the biology community’s growing need for sophisticated software for light microscopy image analysis. We will do this in two main ways: In collaboration with biological partner labs we will create new tools and improve existing tools to make new analyses possible and...