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Thinking like an image analyst, Part II: Removing bright debris from analysis
Pearl V. Ryder In the first post of this series, I gave an overview of this project and explained how I imported the data into CellProfiler. If you’d like to follow along in CellProfiler, the pipeline and images for this project are available here. Now that the images have been imported, I could...
Research
A dataset of images and morphological profiles of 30 000 small-molecule treatments using the Cell Painting assay
Aneuploidy renders cancer cells vulnerable to mitotic checkpoint inhibition.
Cohen-Sharir, JM McFarland, Abdusamad, Marquis, SV Bernhard, Kazachkova, Tang, et al. 2021. “Aneuploidy Renders Cancer Cells Vulnerable to Mitotic Checkpoint Inhibition.”. Nature 590 (7846): 486-91.
Eriene recognized in Forbes 30 under 30!
Huge and excellent news! Our very own Eriene-Heidi Sidhom was recognized in Forbes 30 under 30! Check it out!
Anne Carpenter Awarded Honorary Fellowship of the Royal Microscopical Society
The Council of the Royal Microscopical Society announced today that COBA's Anne Carpenter was unanimously voted to receive an Honorary Fellowship of the Royal Microscopy Society. Honorary Fellowships are bestowed by the Society for preeminence in microscopy and related branches of science. According...
Published: "Open-source deep-learning software for bioimage segmentation"
American Society for Cell Biology journal Molecular Biology of the Cell published a manuscript from COBA researchers surveying several new open-source software tools that aim to make deep-learning–based image segmentation accessible to biologists with limited computational experience. Read the paper...
Free online image analysis workshop for beginners!
June 24: This interactive workshop will focus on adapting CellProfiler pipelines to new datasets. Undergrad / early grad students will be prioritized, but all are welcome. Sign up (space limited): http://broad.io/cellprofilerworkshopsignup.This course will be jointly led by Julia van den Beemd and...
Links
Lazaris - Google Scholar Lazaris - Curriculum Vitae Klarman Cell Observatory - Broad Institute Lazaris - GitHub website Lazaris - MIT website Massachusetts Institute of Technology (MIT) Young Laboratory at the Whitehead Institute Whitehead Institute for Biomedical Research Broad Institute of MIT and...