Jacob Smigiel
Jacob Smigiel, PhD
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35 results found
Mutation and cell state compatibility is required and targetable in Ph+ acute lymphoblastic leukemia minimal residual disease
Winter, Peter S., Michelle L. Ramseier, Andrew W. Navia, Sachit Saksena, Haley Strouf, Nezha Senhaji, Alan DenAdel, et al. 2024. “Mutation and Cell State Compatibility Is Required and Targetable in Ph+ Acute Lymphoblastic Leukemia Minimal Residual Disease”. BioRxiv.
A knockoff calibration method to avoid over-clustering in single-cell RNA-sequencing
DelAdel, Alan, Michelle L. Ramseier, Andrew W. Navia, Alex K. Shalek, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, and Lorin Crawford. 2024. “A Knockoff Calibration Method to Avoid Over-Clustering in Single-Cell RNA-Sequencing”. BioRxiv.
Johan Fredin Haslum
I am a Postdoctoral Fellow at the Imaging Platform. I am interested in applying and developing machine learning methods for analyzing and representing the rich information captured in high throughput imaging datasets.
Electroencephalographic Microstates During Sleep and Wake in Schizophrenia
Murphy, Michael. 2024. “Electroencephalographic Microstates During Sleep and Wake in Schizophrenia.”
Differential functional consequences of GRIN2A mutations associated with schizophrenia and neurodevelopmental disorders
Shepard, Nate. 2024. “Differential Functional Consequences of GRIN2A Mutations Associated With Schizophrenia and Neurodevelopmental Disorders”. Scientific Reports.
Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data
Nwizu, Chibuikem, Madeline Hughes, Michelle L. Ramseier, Andrew W. Navia, Alex K. Shalek, Nicolo Fusi, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, and Lorin Crawford. 2024. “Scalable Nonparametric Clustering With Unified Marker Gene Selection for Single-Cell RNA-Seq Data”. BioRxiv.
Assessing the limits of zero-shot foundation models in single-cell biology
Kedzierska, Kasia Z., Lorin Crawford, Ava P. Amini, and Alex X. Lu. 2023. “Assessing the Limits of Zero-Shot Foundation Models in Single-Cell Biology”. BioRxiv.
Microenvironment drives cell state, plasticity, and drug response in pancreatic cancer
Raghavan, Srivatsan, Peter S. Winter, Andrew W. Navia, Hannah L. Williams, Alan DelAdel, Kristen E. Lowder, Jennyfer Galvez-Reyes, et al. 2021. “Microenvironment Drives Cell State, Plasticity, and Drug Response in Pancreatic Cancer”. Cell.