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Expansion in situ genome sequencing links nuclear abnormalities to aberrant chromatin regulation.
Labade, Ajay S, Zachary D Chiang, Caroline Comenho, Paul L Reginato, Andrew C Payne, Andrew S Earl, Rojesh Shrestha, et al. 2025. “Expansion in Situ Genome Sequencing Links Nuclear Abnormalities to Aberrant Chromatin Regulation.”. Science (New York, N.Y.) 389 (6758): eadt2781.
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To nominate individuals and/or teams for the Merkin Prize, please confirm you've reviewed the eligibility requirements and then fill out the nomination form below. FAQs can be viewed here. For additional questions or technical difficulties, contact merkinprize@broadinstitute.org. Nomination Deadline...
Dylan Mercado
Dylan joined the Broad Summer Scholars Program eager to explore how tiny changes in DNA can ripple outward to affect brain function and health. At the Stanley Center, he worked on understanding the functional effects of missense mutations in the CACNA1A gene, which encodes the CaV2.1 calcium channel...
Reproducible single-cell annotation of programs underlying T cell subsets, activation states and functions.
Kotliar, Dylan, Michelle Curtis, Ryan Agnew, Kathryn Weinand, Aparna Nathan, Yuriy Baglaenko, Kamil Slowikowski, et al. 2025. “Reproducible Single-Cell Annotation of Programs Underlying T Cell Subsets, Activation States and Functions.”. Nature Methods.
Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs.
Valencia, Cristian, Aparna Nathan, Joyce B Kang, Laurie Rumker, Hyunsun Lee, and Soumya Raychaudhuri. 2025. “Modeling Heterogeneity in Single-Cell Perturbation States Enhances Detection of Response EQTLs.”. Nature Genetics.
Enabling Researchers to Quickly Find Useful Controlled-Access Data through View-Only Data Access Requests (VODAR)
Lawson, Jonathan. Working Paper. “Enabling Researchers to Quickly Find Useful Controlled-Access Data through View-Only Data Access Requests (VODAR)”. SSRN, Working Paper.
Leveraging Algorithms to Improve Decision-Making Workflows for Genomic Data Access and Management.
Rahimzadeh, Vasiliki, Jonathan Lawson, Greg Rushton, and Edward S Dove. 2022. “Leveraging Algorithms to Improve Decision-Making Workflows for Genomic Data Access and Management.”. Biopreservation and Biobanking 20 (5): 429-35.
GA4GH: International policies and standards for data sharing across genomic research and healthcare.
Rehm, Heidi L, Angela J H Page, Lindsay Smith, Jeremy B Adams, Gil Alterovitz, Lawrence J Babb, Maxmillian P Barkley, et al. 2021. “GA4GH: International Policies and Standards for Data Sharing across Genomic Research and Healthcare.”. Cell Genomics 1 (2).
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space.
Schatz, Michael C, Anthony A Philippakis, Enis Afgan, Eric Banks, Vincent J Carey, Robert J Carroll, Alessandro Culotti, et al. 2022. “Inverting the Model of Genomics Data Sharing With the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-Space.”. Cell Genomics 2 (1).