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Walsh, Bronwyn, Jonathan Lawson, Sofia Labrecque, and Vasiliki Rahimzadeh. Working Paper. “Where Is All the NIH Data? A Landscape Analysis of the 150 NIH Repositories and the Path Beyond the Mountains”. SSRN, Working Paper.

Simeon-Dubach, Daniel, Zisis Kozlakidis, Juhi Tayal, Shannon J McCall, Wohaib Hasan, Fay Betsou, Jonathan Lawson, and Dominic Allen. 2024. “Experts Speak Forum: Implementation of the FAIR Principles in Biobanking Needs Fair Incentives.”. Biopreservation and Biobanking 22 (6): 557-62.

Baek, Jinyoung, Jonathan Lawson, and Vasiliki Rahimzadeh. 2024. “Investigating the Roles and Responsibilities of Institutional Signing Officials After Data Sharing Policy Reform for Federally Funded Research in the United States: National Survey.”. JMIR Formative Research 8: e49822.

Fischer, David S., Martin A. Villanueva, Peter S. Winter, and Alex K. Shalek. 2025. “Adapting Systems Biology to Address the Complexity of Human Disease in the Single-Cell Era”. Nature Review Genetics.

Nadig, Ajay, Akshaya Thoutam, Madeline Hughes, Anay Gupta, Andrew W. Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, and Lorin Crawford. 2025. “Consequences of Training Data Composition for Deep Learning Models in Single-Cell Biology”. BioRxiv.

Cultrera_di_Montesano, Sebastiano, Davide D’Ascenzo, Srivatsan Raghavan, Ava P. Amini, Peter S. Winter, and Lorin Crawford. 2025. “Hierarchical Cross-Entropy Loss Improves Atlas-Scale Single-Cell Annotation Models”. BioRxiv.

Labade, Ajay S, Zachary D Chiang, Caroline Comenho, Paul L Reginato, Andrew C Payne, Andrew S Earl, Rojesh Shrestha, et al. 2025. “Expansion in Situ Genome Sequencing Links Nuclear Abnormalities to Aberrant Chromatin Regulation.”. Science (New York, N.Y.) 389 (6758): eadt2781.

Kotliar, Dylan, Michelle Curtis, Ryan Agnew, Kathryn Weinand, Aparna Nathan, Yuriy Baglaenko, Kamil Slowikowski, et al. 2025. “Reproducible Single-Cell Annotation of Programs Underlying T Cell Subsets, Activation States and Functions.”. Nature Methods.

Valencia, Cristian, Aparna Nathan, Joyce B Kang, Laurie Rumker, Hyunsun Lee, and Soumya Raychaudhuri. 2025. “Modeling Heterogeneity in Single-Cell Perturbation States Enhances Detection of Response EQTLs.”. Nature Genetics.

Lawson, Jonathan. Working Paper. “Enabling Researchers to Quickly Find Useful Controlled-Access Data through View-Only Data Access Requests (VODAR)”. SSRN, Working Paper.