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New public workflow available!

We are pleased to announce that our first publicly available bio image analysis workflow (an outcome of a collaboration with the Newmark lab at Morgridge Institute for Research) is now available via our COBA GitHub repository. This example workflow automatically detects, orders, and saves individual...

Published: "Open-source deep-learning software for bioimage segmentation"

American Society for Cell Biology journal Molecular Biology of the Cell published a manuscript from COBA researchers surveying several new open-source software tools that aim to make deep-learning–based image segmentation accessible to biologists with limited computational experience. Read the paper...

Free online image analysis workshop for beginners!

June 24: This interactive workshop will focus on adapting CellProfiler pipelines to new datasets. Undergrad / early grad students will be prioritized, but all are welcome. Sign up (space limited): http://broad.io/cellprofilerworkshopsignup. This course will be jointly led by Julia van den Beemd and...

Kevin Eliceiri Elected to AIMBE 2021 Fellows

The American Institute for Medical and Biological Engineering (AIMBE) announced today the election of 174 new members of the AIMBE College of Fellows in recognition of their distinguished and continuing achievements in medical and biological engineering. COBA's own Kevin Eliceiri is among those...

Workshops

Over the past year, we partnered with several renowned research organizations (e.g. EMBL-EBI) and bioimaging-focused groups (e.g. African Bioimaging Consortium) across the world to deliver highly popular hands-on image analysis workshops. These efforts included the first-ever CellProfiler workshop...

Tech R&D Projects

Building on the team’s expertise in developing algorithms and user-friendly software for use in biology under real-world conditions, the Center will focus on two Technology Research and Development (TR&D) projects: (1) deep learning-based image processing, and (2) workflows and accessibility of...

Anne Carpenter featured in Science magazine

COBA's Anne Carpenter today was featured in a Science magazine article on artificial intelligence and its revolutionary role in the field of microscopy. Read the full article here.

COBA and the future of dataset sharing

The Center for Open Bioimage Analysis was noted in a Technology Feature published today by Nature, particularly the Center's priority of sharing bioimaging data sets and deep-learning models. The piece, " Deep learning takes on tumours" by Esther Landhuis, also describes co-founder Anne Carpenter's...