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Papers

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For our latest work, check out our preprints on bioRxiv and arXiv and Zenodo! For CellProfiler citations, visit the CellProfiler website! Google Scholar page (with citation metrics) here Dr. Beth Cimini's CV 55. Cimini BA+, Bankhead P, D’Antuono R, Elnaz F, Fernandez-Rodriguez J, Fuster-Barceló C...

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Contact

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Email imagingadmin@broadinstitute.org Mailing address Broad Institute of MIT and Harvard 415 Main Street Cambridge, MA 02142 Our offices are on the 5th floor of 415 Main St [ Google Maps link]. Look for the entrance of our building to the right of the Broad Institute sign.

Erin Weisbart

Person: Senior Computational Scientist

As part of the image assay development team, I use my background as a biochemist/cell biologist to help other scientists make qualitative data quantitative.

Shatavisha Dasgupta

Person: Postdoctoral Associate

I am a postdoctoral associate at the Cimini Lab. My training is in Surgical Pathology, which traditionally involves diagnosing diseases by qualitative analysis of microscopy images. At the Cimini Lab, I intend to learn, develop, and apply quantitative methods of image analysis to facilitate better...

New open-access article on creating and troubleshooting microscopy analysis workflows

News: March 28, 2024

Now available in Journal of Microscopy: a new invited short review entitled “ Creating and troubleshooting microscopy analysis workflows: Common challenges and common solutions”. In the first part, it gives a basic overview of common image analysis challenges that one may encounter. In the second...

Ksenija Krasina

Person: Imaging Platform Administrative Assistant

I am the Administrative Assistant for the Imaging platform, holding dual master’s degrees in Digital Economy and Business from Zagreb University of Applied Sciences, as well as Cultural and Fashion studies from the University of Zagreb. My interests lie in the financial aspect of nonprofit...

Kamal Hamid

Person: Postdoctoral Associate in Spatial Image Analysis

I am a postdoctoral associate at the Cimini Lab with a background in physiology and neuroscience, and a passion for bioimage analysis. I aim to explore and develop deep learning strategies for the biologically informed integration of spatial transcriptomic data with image-based profiles.

Research

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Our main research theme is empowering biologists with easy-to-use, comprehensively documented tools that facilitate discovery from biological images. From organelles to organisms, we create tools and workflows that allow biologists to find the objects they care about in microscopy images and...

Esteban Miglietta

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I am a Biologist by training and an Image Analyst by choice. Microscopy images allow us a unique insight on cells function and respond to stimuli. As a postdoctoral associate in the Cimini Lab, I aim to learn to apply and develop tools to help researchers turn their beautiful microscopy images into...