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Where are they now? Check their career progress on Dr. Cimini's [ CV] Alum Year Role Alice Lucas 2021-2022 Software Engineer Barbara Diaz-Rohrer 2021-2023 Postdoctoral Associate Callum Tromans-Coia 2022-2023 Postdoctoral Associate David Stirling 2019-2021 Postdoctoral Researcher Eddy Onyango 2023...

Cellular anatomy of the mouse primary motor cortex.

Publication: Journal Article

Muñoz-Castañeda, Rodrigo, Brian Zingg, Katherine S Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N Foster, Anan Li, et al. 2021. “Cellular Anatomy of the Mouse Primary Motor Cortex.”. Nature 598 (7879): 159-66.

Relation of koniocellular layers of dorsal lateral geniculate to inferior pulvinar nuclei in common marmosets.

Publication: Journal Article

Huo, Bing-Xing, Natalie Zeater, Meng Kuan Lin, Yeonsook S Takahashi, Mitsutoshi Hanada, Jaimi Nagashima, Brian C Lee, et al. 2019. “Relation of Koniocellular Layers of Dorsal Lateral Geniculate to Inferior Pulvinar Nuclei in Common Marmosets.”. The European Journal of Neuroscience 50 (12): 4004-17.

Unidirectional monosynaptic connections from auditory areas to the primary visual cortex in the marmoset monkey.

Publication: Journal Article

Majka, Piotr, Marcello G P Rosa, Shi Bai, Jonathan M Chan, Bing-Xing Huo, Natalia Jermakow, Meng K Lin, et al. 2019. “Unidirectional Monosynaptic Connections from Auditory Areas to the Primary Visual Cortex in the Marmoset Monkey.”. Brain Structure & Function 224 (1): 111-31.

An intravenous DNA-binding priming agent protects cell-free DNA and improves the sensitivity of liquid biopsies

Publication: Journal

Tabrizi, Shervin, Carmen Martin-Alonso, Kan Xiong, Timothy Blewett, Sainetra Sridhar, Zhenyi An, Sahil Patel, et al. 2023. “An Intravenous DNA-Binding Priming Agent Protects Cell-Free DNA and Improves the Sensitivity of Liquid Biopsies”. https://doi.org/10.1101/2023.01.13.523947.

Circulating tumor DNA association with residual cancer burden after neoadjuvant chemotherapy in triple-negative breast cancer in TBCRC 030

Publication: Journal Article

Parsons, Heather A., Timothy Blewett, Xiangying Chu, Sainetra Sridhar, Katheryn Santos, Kan Xiong, Vandana G. Abramson, et al. 2023. “Circulating Tumor DNA Association With Residual Cancer Burden After Neoadjuvant Chemotherapy in Triple-Negative Breast Cancer in TBCRC 030”. MedRxiv.

Out of Distribution Generalization via Interventional Style Transfer in Single-Cell Microscopy

Publication: Conference Paper

Pernice, Wolfgang M., Michael Doron, Alex Quach, Aditya Pratapa, Sultan Kenjeyev, Nicholas De Veaux, Michio Hirano, and Juan C. Caicedo. 2023. “Out of Distribution Generalization via Interventional Style Transfer in Single-Cell Microscopy”. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops.

Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution.

Publication: Journal Article

Mangiameli, Sarah M, Haiqi Chen, Andrew S Earl, Julie A Dobkin, Daniel Lesman, Jason D Buenrostro, and Fei Chen. 2023. “Photoselective Sequencing: Microscopically Guided Genomic Measurements With Subcellular Resolution.”. Nature Methods 20 (5): 686-94.

A transcription factor atlas of directed differentiation.

Publication: Journal Article

Joung, Julia, Sai Ma, Tristan Tay, Kathryn R Geiger-Schuller, Paul C Kirchgatterer, Vanessa K Verdine, Baolin Guo, et al. 2023. “A Transcription Factor Atlas of Directed Differentiation.”. Cell 186 (1): 209-229.e26.

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models.

Publication: Journal Article

Rozowsky, Joel, Jiahao Gao, Beatrice Borsari, Yucheng T Yang, Timur Galeev, Gamze Gürsoy, Charles B Epstein, et al. 2023. “The EN-TEx Resource of Multi-Tissue Personal Epigenomes & Variant-Impact Models.”. Cell 186 (7): 1493-1511.e40.