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Getting started using CellProfiler from the command line

Blog: April 30, 2021
Beth Cimini Cross posted from our GitHub wiki — check there for any future updates! Running CellProfiler from the command line has a major advantage — you don't need to spend computational power or memory creating the graphical user interface (GUI) that you're used to using in CellProfiler! It also...

Ian Lee

Person: Undergraduate Student
MIT SuperUROP

Published: "CellProfiler 4: improvements in speed, utility and usability"

News: September 10, 2021
BMC Bioinformatics published a paper by members of the COBA team detailing the release of CellProfiler 4. CellProfiler 4 provides significantly improved performance in complex workflows compared to previous versions. This release will ensure that researchers will have continued access to...

Thinking like an image analyst, Part IV: Detecting fibers as objects

Blog: November 05, 2021
Pearl V. Ryder In the previous post in this “Thinking like an image analyst” series, I explained how I enhanced fibers to increase their brightness and applied a background subtraction to decrease the intensity of the background. In combination with masking out very bright debris pixels ( Part II of...