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Research

Our main research theme is empowering biologists with easy-to-use, comprehensively documented tools that facilitate discovery from biological images. From organelles to organisms, we create tools and workflows that allow biologists to find the objects they care about in microscopy images and...

Press

Articles and other press ​ ​2024: Beth Cimini is interviewed in special episode on Mental Health on Peter O'Toole's podcast series "The Microscopists" [ Link to video] 2024. Beth Cimini is interviewed in "Enhancing Global Access: interview with CZI grantee Beth Cimini" (Focal Plane/ The Company of...

Software and code

CellProfiler CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. More information can be found in the CellProfiler Wiki. Download CellProfiler...

Training program

The Postdoctoral Training Program in Bioimage Analysis is an opportunity for biologists with strong interest and some experience in image analysis to develop deeper skills through many different individual projects as well as by supporting thousands of researchers around the world who are...

Collaborate with us

There are a number of different ways to work with us depending on the scale of the help/collaboration. Don't see a path that matches your needs? We're happy to get creative - please email us to discuss! Scale/Scope Who can access? Who pays? Forum specific questions Anyone Our own grants ( COBA)...

Group Alumni

Where are they now? Check their career progress on Dr. Cimini's [ CV] Alum Year Role Alice Lucas 2021-2022 Software Engineer Barbara Diaz-Rohrer 2021-2023 Postdoctoral Associate Callum Tromans-Coia 2022-2023 Postdoctoral Associate David Stirling 2019-2021 Postdoctoral Associate Eddy Onyango 2023...

Image Analysis Collaboration: A Practical Guide

What is the role of an image analyst? An image analyst is an expert in taking images and extracting quantitative measurements that can be used for biological discovery. We do not do image acquisition, though most of us have a background as wet-lab biologists and microscopists that we draw on. Image...

Join our lab

Any open positions in our lab are always posted on the Broad Institute Careers website and the "Job Opportunities" section of the image.sc forum. When timelines allow, we also share postings on the MicroscopyDB jobs board. We are proud to foster a respectful, multicultural, and interdisciplinary...