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Getting started using CellProfiler from the command line

Beth Cimini Cross posted from our GitHub wiki — check there for any future updates! Running CellProfiler from the command line has a major advantage — you don't need to spend computational power or memory creating the graphical user interface (GUI) that you're used to using in CellProfiler! It also...

Published: "Open-source deep-learning software for bioimage segmentation"

American Society for Cell Biology journal Molecular Biology of the Cell published a manuscript from COBA researchers surveying several new open-source software tools that aim to make deep-learning–based image segmentation accessible to biologists with limited computational experience. Read the paper...

Free online image analysis workshop for beginners!

June 24: This interactive workshop will focus on adapting CellProfiler pipelines to new datasets. Undergrad / early grad students will be prioritized, but all are welcome. Sign up (space limited): http://broad.io/cellprofilerworkshopsignup.This course will be jointly led by Julia van den Beemd and...

In The Media

National Academy of Medicine announces Anna as an Emerging Leader in Health and Medicine On September 14, 2021 the National Academy of Medicine (NAM) announced ten Emerging Leaders in Health and Medicine, including Anna Greka. These scholars have committed to a three-year term working...