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Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data

Publication: Journal Article

Nwizu, Chibuikem, Madeline Hughes, Michelle L. Ramseier, Andrew W. Navia, Alex K. Shalek, Nicolo Fusi, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, and Lorin Crawford. 2024. “Scalable Nonparametric Clustering With Unified Marker Gene Selection for Single-Cell RNA-Seq Data”. BioRxiv.

Assessing the limits of zero-shot foundation models in single-cell biology

Publication: Journal Article

Kedzierska, Kasia Z., Lorin Crawford, Ava P. Amini, and Alex X. Lu. 2023. “Assessing the Limits of Zero-Shot Foundation Models in Single-Cell Biology”. BioRxiv.

Microenvironment drives cell state, plasticity, and drug response in pancreatic cancer

Publication: Journal Article

Raghavan, Srivatsan, Peter S. Winter, Andrew W. Navia, Hannah L. Williams, Alan DelAdel, Kristen E. Lowder, Jennyfer Galvez-Reyes, et al. 2021. “Microenvironment Drives Cell State, Plasticity, and Drug Response in Pancreatic Cancer”. Cell.

Evelyn Tong

Person: Graduate Student, MIT

Evelyn Tong Evelyn is a PhD candidate in the Medical Engineering and Medical Physics (MEMP) program in the Harvard-MIT Health Sciences and Technology (HST) department. Her primary research interest is developing high-throughput methods along with single-cell genomic tools to identify cell-intrinsic...

Shengmiao Chen

Person: Postdoctoral Associate, Dana Farber Cancer Institute

Shengmiao Chen, PhD Shengmiao is a postdoc in the Raghavan Lab. During his PhD, he focused on discovering cancer targets through CRISPR screening and elucidating molecular mechanisms. His current research aims to identify potential therapeutic targets for pancreatic cancer through screening. He...