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Anna Greka MD, PHD
Photo credit: Martin Adolfsson Associate Professor Harvard Medical School Brigham and Women’s Hospital Institute Member Director Kidney Disease Initiative Broad Institute of MIT and Harvard With a focus on laying the foundation for molecularly targeted therapies, Anna’s scientific work is centered...
Published: "Open-source deep-learning software for bioimage segmentation"
American Society for Cell Biology journal Molecular Biology of the Cell published a manuscript from COBA researchers surveying several new open-source software tools that aim to make deep-learning–based image segmentation accessible to biologists with limited computational experience. Read the paper...
Free online image analysis workshop for beginners!
June 24: This interactive workshop will focus on adapting CellProfiler pipelines to new datasets. Undergrad / early grad students will be prioritized, but all are welcome. Sign up (space limited): http://broad.io/cellprofilerworkshopsignup. This course will be jointly led by Julia van den Beemd and...
Anne Carpenter Awarded American Society for Cell Biology’s Women in Cell Biology Mid-career Award
COBA's Anne Carpenter recently won the American Society for Cell Biology's Women in Cell Biology Mid-career Award. As part of this award, Carpenter wrote an award essay, "A well-engineered path into cell biology and academia", published in the November 30 issue of Molecular Biology of the Cell. Of...
Anne Carpenter featured in "Automating Drug Discovery With Machine Learning"
Technology Networks recently published "Automating Drug Discovery With Machine Learning" by Neeta Ratanghayra and featured a section on image-based profiling for drug discovery. COBA's Anne Carpenter was featured and spoke about image-based profiling in general as well as the use of machine learning...
CellProfiler Analyst 3.0 Release: Accessible data exploration and machine learning for image analysis.
David R. Stirling We have now released CellProfiler Analyst version 3.0! Download it here. As with CellProfiler 4, the primary goal of this release has been to migrate from Python 2 to Python 3 and modernise the application. We’ve also focused on improving performance and usability. Along with...
News & Events
Map shows how cancer cells spread through the body Broad@15 Talk Series; The March Toward Cancer Precision Medicine 09/2019
Research
Understanding Ion Channel Biology in the Kidney and Beyond Investigating a New Pathway for Misfolded Protein Quality Control and Degradation Dissecting Lipotoxicity Pathways and their Effect on Proteostasis Harnessing Next-Generation Tools to Gain Insights at Single-Cell Resolution A major focus of...
CellProfiler 4.1 Release
Beth Cimini Hi all, We hope you’re enjoying our new CellProfiler 4.1 release! If you haven’t had a chance to see it yet, please do grab a copy from https://cellprofiler.org/releases. There are a few new features or changes of note we’re particularly excited to share with you all: For the first time...