Algorithms for regulatory network inference and experiment planning in systems biology
Pratapa, Aditya. 2020. “Algorithms for Regulatory Network Inference and Experiment Planning in Systems Biology”. Department of Computer Science.
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Selective modulation of a pan-essential protein as a therapeutic strategy in cancer
Malone, Clare F., Neekesh V. Dharia, Guillaume Kugener, Alexandra B. Forman, Michael V. Rothberg, Mai Abdusamad, Alfredo Gonzalez, et al. 2021. “Selective Modulation of a Pan-Essential Protein As a Therapeutic Strategy in Cancer”. Cancer Discov.
Different roles of T-type calcium channel isoforms in hypnosis induced by an endogenous neurosteroid epipregnanolone
Coulter, Ian, Tamara Timic Stamenic, Pierce Eggan, Brier R Fine, Timothy Corrigan, Douglas F Covey, Lingling Yang, Jen Q Pan, and Slobodan M Todorovic. 2021. “Different Roles of T-Type Calcium Channel Isoforms in Hypnosis Induced by an Endogenous Neurosteroid Epipregnanolone”. Neuropharmacology.
Duplex-Repair enables highly accurate sequencing, despite DNA damage
Xiong, Kan, Douglas Shea, Justin Rhoades, Timothy Blewett, Ruolin Liu, Jin H Bae, Erica Nguyen, Mike Makrigiorgos, Todd R Golub, and Viktor A Adalsteinsson. 2021. “Duplex-Repair Enables Highly Accurate Sequencing, Despite DNA Damage”. Nucleic Acids Res 50 (1).
Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling
Niepel, M., M. Hafner, Q. Duan, Z. Wang, E. O. Paull, M. Chung, X. Lu, et al. 2017. “Common and Cell-Type Specific Responses to Anti-Cancer Drugs Revealed by High Throughput Transcript Profiling”. Nat Commun 8: 1186.
Small-Molecule and CRISPR Screening Converge to Reveal Receptor Tyrosine Kinase Dependencies in Pediatric Rhabdoid Tumors
Oberlick, E. M., M. G. Rees, B. Seashore-Ludlow, F. Vazquez, G. M. Nelson, N. V. Dharia, B. A. Weir, et al. 2019. “Small-Molecule and CRISPR Screening Converge to Reveal Receptor Tyrosine Kinase Dependencies in Pediatric Rhabdoid Tumors”. Cell Rep 28: 2331-2344 e8.
MicroRNA dynamics in the stages of tumorigenesis correlate with hallmark capabilities of cancer
Olson, P., J. Lu, H. Zhang, A. Shai, M. G. Chun, Y. Wang, S. K. Libutti, E. K. Nakakura, T. R. Golub, and D. Hanahan. 2009. “MicroRNA Dynamics in the Stages of Tumorigenesis Correlate With Hallmark Capabilities of Cancer”. Genes Dev 23: 2152-65.
Author Correction: Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers
Parikh, A. R., I. Leshchiner, L. Elagina, L. Goyal, C. Levovitz, G. Siravegna, D. Livitz, et al. 2019. “Author Correction: Liquid versus Tissue Biopsy for Detecting Acquired Resistance and Tumor Heterogeneity in Gastrointestinal Cancers”. Nat Med 25: 1949.
Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer
Parsons, H. A., J. Rhoades, S. C. Reed, G. Gydush, P. Ram, P. Exman, K. Xiong, et al. 2020. “Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer”. Clin Cancer Res 26: 2556-64.
mRNA expression signature of Gleason grade predicts lethal prostate cancer
Penney, K. L., J. A. Sinnott, K. Fall, Y. Pawitan, Y. Hoshida, P. Kraft, J. R. Stark, et al. 2011. “MRNA Expression Signature of Gleason Grade Predicts Lethal Prostate Cancer”. J Clin Oncol 29: 2391-6.