Publications

Acanthamoeba

  • Stefely, J.A., Calvo, S.E., Kanakapura Sundararaj, B., ..., Udeshi, N.D., Mootha, V.K., Samuelson, J. Acanthamoeba castellanii genome reannotation and multi-omic profiling reveals cyst wall proteins and mitochondrial remodeling during encystation (2026). "Journal Name" [doi: **]
  • Stefely, J.A., Deng, F.G., Chen, M.Z., ..., Udeshi, N.D., Samuelson, J., Mootha, V.K. Mitochondrial proteome and complexome of the amoebozoan pathogen Acanthamoeba delineate an electron transport chain rewired by anoxia (2026). "Journal Name" [doi: **]
  • Fry, M.Y., Luce, B.E., Stefely, J.A., ..., Samuelson, J., Mootha, V.K., Chao, L.H. Structure of an Acanthamoeba mitochondrial ATP synthase reveals a physical link between oxidative phosphorylation and the tricarboxylic cycle (2026). "Journal Name" [doi: **]

Arabidopsis

  • Kim, M., Calvo, S.E., Nguyen, K., Rivera, K.D., Udeshi, N.D., MitoCarta Tree of Life Consortium, Mootha, V.K. A high-confidence plant mitochondrial proteome via protein correlation profiling (2026). "Journal Name" [doi: **]

Babesia

  • Betsinger, C.N., Yusuf Mian, S., Bauer, N.C., ..., Calvo, S.E., Duraisingh, M.T., Mootha, V.K. A high confidence apicomplexan mitochondrial proteome for Babesia divergens (2026). "Journal Name" [doi: **]

Evolution

  • Chen, M.Z., Stefely, J.A., Bardon, E.G., MitoCarta Tree of Life Consortium, Calvo, S.E., Mootha, V.K. Comparative mitochondrial proteomics across the tree of life reveals evolutionary, functional, and therapeutic insights (2026). "Journal Name" [doi: **]

Giardia

  • Goyal, M., Issa, T.M., Stefely, J.A., ..., Calvo, S.E., Mootha, V.K., Samuelson, J. A high-confidence inventory of the proteins in the mitochondrion-related organelle of Giardia (2026). "Journal Name" [doi: **]

Kinetoplastids (Leishmania / Trypanosoma)

  • Vacas, A.F., Solayman, M., Calvo, S.E., Nguyen, K., Lian, C.G., Rivera, K.D., Chen, M.Z., MitoCarta Tree of Life Consortium, Udeshi, N.D., Mootha, V.K., Aphasizhev, R., Aphasizheva, I. Lineage-specific innovations expand mitochondrial proteomes in kinetoplastids (2026). "Journal Name" [doi: **]
  • Solayman, M., Liao Y., Calvo, S.E., Vacas, A.F., Papanastasiou, M., Rivera, K.D., Mani, D., Boyle, B., Deng, F.G., MitoCarta Tree of Life Consortium, Udeshi, N.D., Mootha, V.K., Aphasizheva, I., Chao, L.H., Aphasizhev, R. Conserved and divergent mitochondrial assemblies in kinetoplastid parasites (2026). "Journal Name" [doi: **]