Publications

Preface

• Mootha V.K., Calvo S.E. Decoding mitochondrial proteomes of diverse eukaryotes. Cell 2026; 189 [doi: 10.1016/j.cell.2026.09.007]

Acanthamoeba

• Stefely J.A., Calvo S.E., Sundararaj B.K., Haas B.J., Chen M.Z., Goyal M., Zhang L., Issa T.M., Deng F.G., Xu C., et al. Acanthamoeba castellanii genome reannotation and multi-omic encystation profiling reveals cyst wall proteins and carbohydrate-active enzymes. Cell Press Blue 2026;1 [doi: 10.1016/j.cpblue.2026.100125]
• Stefely J.A., Deng F.G., Chen M.Z., Nguyen K., Luce B.E., Fry M.Y., Guo X.A., Maliaris K., Rivera K.D., Papanastasiou M., et al. Mitochondrial proteome of Acanthamoeba delineates aerobic and anaerobic pathways dynamically regulated by oxygen. Cell 2026; 189 [doi: 10.1016/j.cell.2026.08.056]
• Fry M.Y., Luce B.E., Stefely J.A., Chen M.Z., Deng F.G., Issa T.M., MitoCarta Tree of Life Consortium, Calvo S.E., Samuelson J., Mootha V.K., Chao L.H. Acanthamoeba ATP synthase structure reveals the TCA cycle is tethered to OXPHOS. Cell 2026; 189 [doi: 10.1016/j.cell.2026.08.057]

Arabidopsis

• Kim M., Calvo S.E., Nguyen K., Rivera K.D., Udeshi N.D., MitoCarta Tree of Life Consortium, Mootha V.K. A high-confidence plant mitochondrial proteome via protein correlation profiling. Cell 2026;189 [doi: 10.1016/j.cell.2026.08.027]

Babesia

• Betsinger C.N., Calvo S.E., Mian S.Y., Bauer N.C., Paul A.S., Batzli D.L., Lian C.G., Boyle B.W., Rivera K.D., Sreenivasamurthy S.K., et al. Mitochondrial proteome of the apicomplexan Babesia divergens. Current Biology 2026; 36 [doi: 10.1016/j.cub.2026.08.072]

Evolution

• Chen M.Z., Stefely J.A., Bardon E.G., MitoCarta Tree of Life Consortium, Calvo S.E., Mootha V.K. Comparative analysis of mitochondrial proteomes across the tree of life. Cell 2026; 189 [doi: 10.1016/j.cell.2026.08.029]

Giardia

• Goyal M., Issa T.M., Stefely J.A., Venkatraman K., McCoy J.G., Lam S.S., Chen M.Z., Nguyen K., Lian C.G., Jean-Beltran P.M., et al. A high-confidence inventory of the proteins in the mitochondrion-related organelle of Giardia. Current Biology 2026; 36 [doi: 10.1016/j.cub.2026.07.074]

Human

• Rath, S., Sharma, R., Gupta, R., ..., Calvo, S.E., Mootha, V.K. MitoCarta3.0: An updated inventory of the mitochondrial proteome, now with sub-organelle localization and pathway annotations (2020). Nucleic Acids Research [Pubmed: 33174596] 
• Calvo, S.E., Klauser, C.R., Mootha, V.K. MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins (2015).  Nucleic Acids Research [doi: 10.1093/nar/gkv1003]
• Pagliarini, D.J., Calvo, S.E., Chang, B., Sheth, S.A., Vafai, S.B., Ong, S.E., Walford, G.A., Sugiana, C., Boneh, A., Chen, W.K., et al. (2008). A mitochondrial protein compendium elucidates complex I disease biology. Cell 134, 112-123 [Pubmed: 18614015]

Kinetoplastids (Leishmania / Trypanosoma)

• Vacas A.F., Solayman M., Calvo S.E., Nguyen K., Lian C.G., Rivera K.D., Chen M.Z., MitoCarta Tree of Life Consortium, Udeshi N.D., Mootha V.K., et al. Lineage-specific innovations expand mitochondrial proteomes in kinetoplastids. Molecular Cell 2026; 86 [doi: 10.1016/j.molcel.2026.08.032]
• Solayman M., Liao Y.-T., Calvo S.E., Vacas A.F., Papanastasiou M., Rivera K.D., Mani D.R., Boyle B.W., Deng F.G., MitoCarta Tree of Life Consortium, et al. Conserved and divergent mitochondrial assemblies in kinetoplastid parasites. Molecular Cell 2026; 86 [doi: 10.1016/j.molcel.2026.08.031]